Witten, Tibshirani, and Hastie (2009) A penalized matrix decomposition, with applications to canonical correlation analysis and principal components. <i>Biostatistics</i> 10(3): 515-534.
Witten and Tibshirani (2009) Covariance-regularized regression and classification for ... <i>Journal of the Royal Statistical Society, Series B</i> 71(3): 615-636.
Witten and Tibshirani (2009). Extensions of sparse canonical correlation analysis ... <i>Statistical Applications in Genetics and Molecular Biology</i> 8(1): Article 28.
Witten and Tibshirani (2008) Testing significance of features by lassoed principal components. <i>Annals of Applied Statistics</i> 2(3): 986-1012.
Tan, Petersen, and Witten (2014) Classification of RNA-Seq Data. Statistical Analysis of Next Generation Sequencing Data. Springer. Editors: Daniel Nettleton and Somnath Data.
Kircher, Witten, et al. (2014) A general framework for estimating the relative pathogenicity of human genetic variants. <i>Nature Genetics</i> 46: 310-315.
Zhao et al. (2013) Is GATA3 expression maintained in regional metastases? A study of paired primary and metastatic ... <i>The American Journal of Surgical Pathology</i> 37(12): 1876- 1881.
Witten and Tibshirani (2013) Scientific research in the era of omics: the good, the bad, and the sloppy. <i>Journal of the American Medical Informatics Association</i> 20(1): 125-127.
Brunner et al. (2012) Transcriptional profiling of lncRNAs and novel transcribed region across a diverse panel of archived human cancers. <i>Genome Biology</i> 13(8):R75.
Williams, Witten, Duester, and Chou (2012) The benefits of implant removal from the foot and ankle. <i>Journal of Bone and Joint Surgery</i> 94(14): 1316-1320.
Patwardhan et al. (2012) Massively parallel functional dissection of mammalian enhancers in vivo. <i>Nature Biotechnology</i> 30(3): 265-270.
Wu et al. (2011) Endogenous versus tumor-specific host response to breast carcinoma: a study of stromal response ... <i>Clinical Cancer Research</i> 17(3): 437-446.
Ganjoo et al. (2011) The prognostic value of tumor associated macrophages in leiomyosarcoma: A single institution study. <i>American Journal of Clinical Oncology</i> 34(1): 82-86.
Caramuta et al. (2010) MicroRNA expression profiles associated with mutational status and survival in malignant melanoma. <i>Journal of Investigative Dermatology</i> 130: 2062-2070.
Jockers and Witten (2010) A comparative study of machine learning methods for authorship attribution. <i>Literary and Linguistic Computing</i> 25(2): 215-223.
Beck et al. (2010) Discovery of molecular subtypes in leiomyosarcoma through integrative molecular profiling. <i>Oncogene</i> 29: 845-854
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Somervaille et al. (2009) Hierarchical maintenance of MLL myeloid leukemia stem cells employs a transcriptional program shared ... <i>Cell Stem Cell</i> 4(2): 129-140.
Jockers, Witten, and Criddle (2009) Reassessing the authorship of the Book of Mormon ... <i>Literary and Linguistic Computing</i> 23(4): 465-491.
Brar et al. (2009) Breast angiosarcoma: case series and expression of vascular endothelial growth factor. <i>Case Reports in Oncology</i> 2: 242-250.